#!/usr/bin/env python3 # Generate adxl345 accelerometer graphs # # Copyright (C) 2020 Kevin O'Connor # Copyright (C) 2020 Dmitry Butyugin # # This file may be distributed under the terms of the GNU GPLv3 license. import importlib, optparse, os, sys from textwrap import wrap import numpy as np, matplotlib sys.path.append( os.path.join(os.path.dirname(os.path.realpath(__file__)), "..", "klippy") ) shaper_calibrate = importlib.import_module(".shaper_calibrate", "extras") MAX_TITLE_LENGTH = 65 def parse_log(logname, opts): with open(logname) as f: for header in f: if header.startswith("#"): continue if header.startswith("freq,psd_x,psd_y,psd_z,psd_xyz"): # Processed power spectral density file break # Raw accelerometer data return np.loadtxt(logname, comments="#", delimiter=",") # Parse power spectral density data data = np.loadtxt(logname, skiprows=1, comments="#", delimiter=",") calibration_data = shaper_calibrate.CalibrationData( freq_bins=data[:, 0], psd_sum=data[:, 4], psd_x=data[:, 1], psd_y=data[:, 2], psd_z=data[:, 3], ) calibration_data.set_numpy(np) return calibration_data ###################################################################### # Raw accelerometer graphing ###################################################################### def plot_accel(datas, lognames): fig, axes = matplotlib.pyplot.subplots(nrows=3, sharex=True) axes[0].set_title( "\n".join( wrap("Accelerometer data (%s)" % (", ".join(lognames)), MAX_TITLE_LENGTH) ) ) axis_names = ["x", "y", "z"] for data, logname in zip(datas, lognames): if isinstance(data, shaper_calibrate.CalibrationData): raise error( "Cannot plot raw accelerometer data using the processed" " resonances, raw_data input is required" ) first_time = data[0, 0] times = data[:, 0] - first_time for i in range(len(axis_names)): avg = data[:, i + 1].mean() adata = data[:, i + 1] - data[:, i + 1].mean() ax = axes[i] label = "\n".join(wrap(logname, 60)) + " (%+.3f mm/s^2)" % (-avg,) ax.plot(times, adata, alpha=0.8, label=label) axes[-1].set_xlabel("Time (s)") fontP = matplotlib.font_manager.FontProperties() fontP.set_size("x-small") for i in range(len(axis_names)): ax = axes[i] ax.grid(True) ax.legend(loc="best", prop=fontP) ax.set_ylabel("%s accel" % (axis_names[i],)) fig.tight_layout() return fig ###################################################################### # Frequency graphing ###################################################################### # Calculate estimated "power spectral density" def calc_freq_response(data, max_freq): if isinstance(data, shaper_calibrate.CalibrationData): return data helper = shaper_calibrate.ShaperCalibrate(printer=None) return helper.process_accelerometer_data(data) def calc_specgram(data, axis): if isinstance(data, shaper_calibrate.CalibrationData): raise error( "Cannot calculate the spectrogram using the processed" " resonances, raw_data input is required" ) N = data.shape[0] Fs = N / (data[-1, 0] - data[0, 0]) # Round up to a power of 2 for faster FFT M = 1 << int(0.5 * Fs - 1).bit_length() window = np.kaiser(M, 6.0) def _specgram(x): return matplotlib.mlab.specgram( x, Fs=Fs, NFFT=M, noverlap=M // 2, window=window, mode="psd", detrend="mean", scale_by_freq=False, ) d = {"x": data[:, 1], "y": data[:, 2], "z": data[:, 3]} if axis != "all": pdata, bins, t = _specgram(d[axis]) else: pdata, bins, t = _specgram(d["x"]) for ax in "yz": pdata += _specgram(d[ax])[0] return pdata, bins, t def plot_frequency(datas, lognames, max_freq): calibration_data = calc_freq_response(datas[0], max_freq) for data in datas[1:]: calibration_data.add_data(calc_freq_response(data, max_freq)) freqs = calibration_data.freq_bins psd = calibration_data.psd_sum[freqs <= max_freq] px = calibration_data.psd_x[freqs <= max_freq] py = calibration_data.psd_y[freqs <= max_freq] pz = calibration_data.psd_z[freqs <= max_freq] freqs = freqs[freqs <= max_freq] fig, ax = matplotlib.pyplot.subplots() ax.set_title( "\n".join( wrap("Frequency response (%s)" % (", ".join(lognames)), MAX_TITLE_LENGTH) ) ) ax.set_xlabel("Frequency (Hz)") ax.set_ylabel("Power spectral density") ax.plot(freqs, psd, label="X+Y+Z", alpha=0.6) ax.plot(freqs, px, label="X", alpha=0.6) ax.plot(freqs, py, label="Y", alpha=0.6) ax.plot(freqs, pz, label="Z", alpha=0.6) ax.xaxis.set_minor_locator(matplotlib.ticker.AutoMinorLocator()) ax.yaxis.set_minor_locator(matplotlib.ticker.AutoMinorLocator()) ax.grid(which="major", color="grey") ax.grid(which="minor", color="lightgrey") ax.ticklabel_format(axis="y", style="scientific", scilimits=(0, 0)) fontP = matplotlib.font_manager.FontProperties() fontP.set_size("x-small") ax.legend(loc="best", prop=fontP) fig.tight_layout() return fig def plot_compare_frequency(datas, lognames, max_freq, axis): fig, ax = matplotlib.pyplot.subplots() ax.set_title("Frequency responses comparison") ax.set_xlabel("Frequency (Hz)") ax.set_ylabel("Power spectral density") for data, logname in zip(datas, lognames): calibration_data = calc_freq_response(data, max_freq) freqs = calibration_data.freq_bins psd = calibration_data.get_psd(axis)[freqs <= max_freq] freqs = freqs[freqs <= max_freq] ax.plot(freqs, psd, label="\n".join(wrap(logname, 60)), alpha=0.6) ax.xaxis.set_minor_locator(matplotlib.ticker.AutoMinorLocator()) ax.yaxis.set_minor_locator(matplotlib.ticker.AutoMinorLocator()) ax.grid(which="major", color="grey") ax.grid(which="minor", color="lightgrey") fontP = matplotlib.font_manager.FontProperties() fontP.set_size("x-small") ax.legend(loc="best", prop=fontP) fig.tight_layout() return fig # Plot data in a "spectrogram colormap" def plot_specgram(data, logname, max_freq, axis): pdata, bins, t = calc_specgram(data, axis) fig, ax = matplotlib.pyplot.subplots() ax.set_title( "\n".join(wrap("Spectrogram %s (%s)" % (axis, logname), MAX_TITLE_LENGTH)) ) ax.pcolormesh(t, bins, pdata, norm=matplotlib.colors.LogNorm()) ax.set_ylim([0.0, max_freq]) ax.set_ylabel("frequency (hz)") ax.set_xlabel("Time (s)") fig.tight_layout() return fig ###################################################################### # CSV output ###################################################################### def write_frequency_response(datas, output): helper = shaper_calibrate.ShaperCalibrate(printer=None) calibration_data = helper.process_accelerometer_data(datas[0]) for data in datas[1:]: calibration_data.add_data(helper.process_accelerometer_data(data)) helper.save_calibration_data(output, calibration_data) def write_specgram(psd, freq_bins, time, output): M = freq_bins.shape[0] with open(output, "w") as csvfile: csvfile.write("freq\\t") for ts in time: csvfile.write(",%.6f" % (ts,)) csvfile.write("\n") for i in range(M): csvfile.write("%.1f" % (freq_bins[i],)) for value in psd[i, :]: csvfile.write(",%.6e" % (value,)) csvfile.write("\n") ###################################################################### # Startup ###################################################################### def is_csv_output(output): return output and os.path.splitext(output)[1].lower() == ".csv" def setup_matplotlib(output): global matplotlib if is_csv_output(output): # Only mlab may be necessary with CSV output import matplotlib.mlab return if output: matplotlib.rcParams.update({"figure.autolayout": True}) matplotlib.use("Agg") import matplotlib.pyplot, matplotlib.dates, matplotlib.font_manager import matplotlib.ticker def main(): # Parse command-line arguments usage = "%prog [options] " opts = optparse.OptionParser(usage) opts.add_option( "-o", "--output", type="string", dest="output", default=None, help="filename of output graph", ) opts.add_option( "-f", "--max_freq", type="float", default=200.0, help="maximum frequency to graph", ) opts.add_option( "-r", "--raw", action="store_true", help="graph raw accelerometer data" ) opts.add_option( "-c", "--compare", action="store_true", help="graph comparison of power spectral density " "between different accelerometer data files", ) opts.add_option( "-s", "--specgram", action="store_true", help="graph spectrogram of accelerometer data", ) opts.add_option( "-a", type="string", dest="axis", default="all", help="axis to graph (one of 'all', 'x', 'y', or 'z')", ) options, args = opts.parse_args() if len(args) < 1: opts.error("Incorrect number of arguments") # Parse data datas = [parse_log(fn, opts) for fn in args] setup_matplotlib(options.output) if is_csv_output(options.output): if options.raw: opts.error("raw mode is not supported with csv output") if options.compare: opts.error("comparison mode is not supported with csv output") if options.specgram: if len(args) > 1: opts.error("Only 1 input is supported in specgram mode") pdata, bins, t = calc_specgram(datas[0], options.axis) write_specgram(pdata, bins, t, options.output) else: write_frequency_response(datas, options.output) return # Draw graph if options.raw: fig = plot_accel(datas, args) elif options.specgram: if len(args) > 1: opts.error("Only 1 input is supported in specgram mode") fig = plot_specgram(datas[0], args[0], options.max_freq, options.axis) elif options.compare: fig = plot_compare_frequency(datas, args, options.max_freq, options.axis) else: fig = plot_frequency(datas, args, options.max_freq) # Show graph if options.output is None: matplotlib.pyplot.show() else: fig.set_size_inches(8, 6) fig.savefig(options.output) if __name__ == "__main__": main()